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Control of P2X2 Channel Permeability by the Cytosolic Domain
2 Division of Biology, California Institute of Technology, Pasadena, CA 91125
3 Roche Bioscience, Palo Alto, CA 94304
Address correspondence to Baljit S. Khakh, Division of Neurobiology, MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. Fax (44) 1223-402310; E-mail: bsk{at}mrc-lmb.cam.ac.uk; or Henry A. Lester, Division of Biology 156-29, California Institute of Technology, 1201 East California Boulevard, Pasadena, CA 91125-2900. Fax: (626) 564-8709; E-mail: lester{at}caltech.edu
| ABSTRACT |
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11 Å in the I1 state, but the transition to the I2 state increases the rP2X2 diameter by at least 3 Å. The I1 to I2 transition occurs with a rate constant of
0.5 s-1. The data focus attention on specific residues of P2X2 channel cytoplasmic domains as determinants of permeation in a state-specific manner.
Key Words: ATP ion channel modulation P2X purinoceptor
| INTRODUCTION |
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Some P2X channels also display a time and activation-dependent increase in permeability to organic cations and fluorescent dye molecules before they desensitize. This phenomenon was first reported for, and considered unique to, the P2X7 channel (Surprenant et al., 1996
). But subsequent studies demonstrated permeability changes for various recombinant and natively expressed P2X channels in neurons (Khakh et al., 1999
; Virginio et al., 1999b
). The permeability change of the P2X2 channel is just one example of the recent observations that some channels change their selectivity on the time scale of milliseconds in response to diverse stimuli, including membrane voltage, neurotransmitter binding, and second messengers (Khakh and Lester, 1999
). The structural bases and biophysical properties of these changes are poorly understood.
The goal of this study was to provide a more complete understanding of the history-dependent changes in cation permeability at P2X2 channels. We found that the previously reported permeability change of rat P2X2 (rP2X2) channels does not occur at mouse P2X2 (mP2X2) channels expressed in oocytes. We used domain swaps, chimeras, point mutations, reversal potential measurements, kinetics, and excluded field theory to track and quantify permeability changes. Surprisingly, we found that permeation of one P2X2 state (I2) is affected by two specific residues in the cytosolic tail domain, whereas the permeation of a preceding state (I1) is not. We conclude that opening to the I2 state requires conformational changes in the C tail domain, whereas opening to I1 does not.
| MATERIALS AND METHODS |
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The C tail swap chimeras were made by digesting rP2X2 and mP2X2 cDNA with HpaI (native site in both cDNAs) and XhoI (in the 3' polylinker) to produce two fragments: (a) the vector and coding region for the entire P2X2 cDNA, minus part of TM2 and the C tail, and (b) DNA coding for the remainder of TM2 and the COOH-terminal domain. The DNA fragments were separated by agarose gel electrophoresis and purified (QIAGEN gel extraction kit). Thus, the mP2X2 C tail domain was ligated into rP2X2, and vice versa, and restriction analysis was used to confirm the construction.
The C tail domain chimeras were constructed in two PCR steps (High Fidelity PCR Master; Roche) using synthetic oligonucleotides (Caltech Polymer Synthesis Facility). In the first step, two PCR reactions produced overlapping pieces, one using rP2X2 as the template and the other using mP2X2 as the template. In the second step, the PCR products from the first steps were used as the template and the final product was a connected chimeric fragment spanning the DNA coding for TM2 through the cytoplasmic tale and into the polylinker. The chimeric fragment and wild-type DNA were digested with HpaI and XhoI. The pieces of the digestion were separated on an agarose gel and extracted. The chimeric fragment and the wild type vector were ligated. Sequencing confirmed the correct chimeras.
Single site mutants were made using Quick Change Mutagenesis (Stratagene). DNA sequencing was used to confirm the mutation. All cDNAs were transcribed in vitro using the mMESSAGE mMACHINE kit (Ambion).
Xenopus laevis oocytes were prepared and used for electrophysiological recordings described using described methods. Two-electrode voltage-clamp recording of oocytes was performed using the Geneclamp 500 amplifier (Axon Instruments, Inc.). Electrodes were pulled from borosilicate glass (Sutter Instrument Co.) and back filled with 3 M KCl to yield resistances of 12 M
. Recordings were made in solution consisting of 98 mM NaCl, 5 mM HEPES, and 1 mM MgCl2 at pH 7.357.4, which was superfused over the oocytes by gravity flow at a rate of
3 ml min-1 (chamber volume was
300 µl). In some experiments, equimolar substitutions of organic cations were made for Na+. The organic cations tested were dimethylammonium, 2-(methyl-amino)-ethanol, Tris+, and N-methyl-d-glucamine. Solutions containing ATP were applied to the oocyte using a solenoid-operated solution switcher (General Valve Company); complete solution exchange around the oocyte occurred within 0.51.0 s. Voltage-clamp experiments were controlled by a Digidata 1200 interface and a personal computer running pCLAMP 7 or pCLAMP 8 software (Axon Instruments, Inc.). In some experiments, the voltage was ramped at a rate of 0.360.6 mV/ms. Data were filtered at 200500 Hz and digitized at 35 times this rate. Current-voltage relation data were filtered at 1 kHz and digitized at 3 kHz. All experiments were performed at 1820°C.
Data Analysis
Data were analyzed using Clampfit (Axon Instruments, Inc.) or Origin 5.0 (Microcal Software, Inc.), and appear in the text and graphs as mean ± SEM from n determinations as indicated (>4). We employed the principles developed by Hille (Dwyer et al., 1980
; Hille, 1992
). A transform of the GHK voltage equation under bionic conditions from
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Erev is the shift in reversal potential and F, R and T have their usual meaning (Khakh et al., 1999
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A square root transformation gives
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5% error in the calculations reported in this study. The radius of ion X+ (Rx) was determined as
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) in PX+/PNa+ is the ratio of PX+/PNa+ for I1 and I2. Slope conductance values for I1, I2, and INa+ were measured from current-voltage relationships over a range of 40 mV around the reversal potential. The values were calculated separately for each cell, before averaging. For I2 there was a small difference between these values and those calculated from the average values of I and Erev(NMDG) (as shown in Table I)
. These differences are expected with small numbers for the numerators, as in the NMDG+ data. For Na+ currents, inward rectification was quantified as G+60 mV/G-60 mV. Rate constants (1/
; s-1) were determined from single exponential fits to the data. Concentration-effect curves were fitted where appropriate, as indicated, to the Hill equation. Statistical tests were performed using the paired or unpaired Student's t test, as appropriate, and a P < 0.05 was taken to indicate significance.
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| RESULTS |
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We also measured the reversal potential of the ATP-evoked currents between I1, I2, and INa+ with voltage ramps (Fig. 1 B), and expressed these values as permeability ratios relative to Na+ (see MATERIALS AND METHODS). The inward I2 current develops with a rate constant (k+1 = 0.3 ± 0.01 s-1) similar to that for the shift in reversal potential (k+1 = 0.4 ± 0.1 s-1) from -66.7 mV for I1 to -35.5 mV for I2, thus showing a change in PNMDG+/PNa+ from 0.07 for I1 to 0.34 for I2 (Table I). The rate constant for the increase in NMDG+ permeability is
0.4 s-1, similar to that reported previously in mammalian cells (Virginio et al., 1999b
). Thus, with time NMDG+ becomes more permeable through rP2X2 pores, but it does not become so permeable as Na+ (Erev 2.7 mV; n = 9, mean values are shown in Table I).
In the present study rP2X2 channels underwent permeability changes in all batches of oocytes, but the extent of the change varied from batch to batch (for example our results show values for PNMDG+/PNa+ between 0.17 and 0.34). These observations suggest the presence of uncontrolled variable(s) that influence the permeability change. To control for this variability, all comparisons between mutant and wt channels were made from the same batches. The remainder of this paper analyzes the nature of the changes that occur during the growth of the current from I1 to I2, and the accompanying shifts in reversal potentials (Fig. 1, A and B).
Species Differences Reveal a Rationale to Study the Basis of Permeability Changes
We cloned and expressed mP2X2 channels in Xenopus oocytes. Rat and mouse P2X2 channels were similar with respect to peak INa+, but the ATP EC50s differed, being 2 ± 1 and 12 ± 4 µM with Hill slopes of 1.9 ± 0.2 and 2.0 ± 0.2, respectively, under conditions where we expect the pore to have dilated to the I2 state (n = 5; Fig. 2
A). Because of the difference in EC50, and to minimize any errors on the linear part of the curve, all subsequent experiments were performed at saturating concentrations of ATP (
100 µM). rP2X2 and mP2X2 channels displayed similar current-voltage relations in Na+ solutions: the INa+ reversal potentials were close to 0 mV (-4.1 ± 0.1 and -6.5 ± 1.5 mV; P > 0.05) and the rectification indices (G+60 mV/G-60 mV) were 0.6 ± 0.2 and 0.5 ± 0.2 (P > 0.05), for rP2X2 and mP2X2 (Fig. 2 B). In short, there were no major differences between rP2X2 and mP2X2 channels in Na+ solutions.
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4.5 Å) because this was the standard protocol in previous work on rP2X2 channels. We next tested the hypothesis that smaller cations also change their permeability during ATP activation of the rP2X2 channel. To address this we used four organic cations (dimethylammonium, 2-(methyl-amino)-ethanol, Tris+ and N-methyl-D-glucamine) with radii between 2.7 and 4.5 Å and determined their permeability relative to Na+ (PX+/PNa+). While both mP2X2 and rP2X2 channels showed increased permeability in the I2 state to all four test ions, the increases for rP2X2 were much more dramatic. Fig. 4 shows the data plotted on graphs to determine the size of the narrowest part of the channel pore, using excluded field theory (EFT).* EFT was used previously to size the muscle nicotinic channel pore at a diameter of 6.58.4 Å (Dwyer et al., 1980
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11 Å that characterizes the rP2X2 I1 and mP2X2 I1 and I2 states. This change increases the area across the narrowest region in the rP2X2 pore by at least
60 Å2, for a circular filter, or
76 Å2 for a square filter.
A Role for the C Tail in Permeability Changes
What is the structural basis for the differences between rP2X2 and mP2X2 with respect to I2? As expected, the mouse cDNA has all the hallmarks of a bona fide P2X channel (North, 1996
; Khakh, 2001
), including sequence identity in TM2 with rP2X2. An alignment for the rP2X2 and mP2X2 protein sequence is shown in Fig. 5
. Of 472 residues, 14 differ between rP2X2 and mP2X2, but none are in the pore segment (Rassendren et al., 1997
; Egan et al., 1998
), near the presumed ATP binding sites (Ennion et al., 2000
; Jiang et al., 2000
) or in TM1 a region known to influence the link between ATP binding to gating of the pore (Haines et al., 2001
; Jiang et al., 2001
). Seven residue differences between rP2X2 and mP2X2 map to the extracellular loop and the other seven are in the 119-residue COOH-terminal cytosolic domain (Fig. 5). Although intact C tail domains are not critical for P2X function, rP2X2 splice variants that have shorter C tail domains display faster desensitization (Simon et al., 1997
; Koshimizu et al., 1998
, 1999
; Smith et al., 1999
), and truncation of C tail domains impairs permeability in some P2X channels (Virginio et al., 1999b
). We reasoned that a comparative study between rP2X2 and mP2X2 channels would represent a direct way to identify residues in the C tail domain that affect permeation.
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We also made the reverse series of chimeras, with progressively increasing numbers of mP2X2 C tail domain residues in the rP2X2 C tail domain. Here again a clear picture is apparent: the last two mP2X2 residues are sufficient to eliminate I2 and PNMDG+/PNa+ changes. Increasing the number of mP2X2 residues in the rP2X2 tail from two to four produces no greater effect than simply substituting two (Fig. 7).
There are two outliers to the trend (shown by gray arrows). Transplantation of five rP2X2 residues into mP2X2 (m407r) produces a channel that desensitizes rapidly within 12 s, whereas the other mutants resemble wt rP2X2 and desensitize negligibly over a time period of up to 60s. Similarly, transplanting four mP2X2 residues into rP2X2 produces a channel that expresses poorly and desensitizes completely. In this chimera, reversal potentials could not be measured at a time point when I2 is expected to occur; therefore, these constructs are not informative with respect to changes in permeability. For these chimeras we expect that the channels close before spending appreciable time in the I2 state. This behavior is similar to our previous data with rP2X1 and rP2X3, which also desensitize rapidly, and previous work with P2X2 channels that indicate mutants in the C tail domain affect desensitization (Smith et al., 1999
).
Permeability Changes Are Unrelated to I1, but Correlate with the Growth of I2
The dataset presented in this study allows us to address a number of questions about the relationships between I1 and I2 states. For instance, is the extent of pore dilation in the I2 states determined by the permeability of the preceding I1 state? In other words, do channels with a lower PNMDG+/PNa+ in the I1 state result in a lower PNMDG+/PNa+ for the I2 state, and vice versa? Moreover, are PNMDG+/PNa+ changes related to I1 amplitude, and therefore ion flow? There was a clear correlation for all point mutants, chimeras, tail swaps, and wt channels between I2 amplitude and I2 PNMDG+/PNa+ changes, but not between I1 amplitude and I2 PNMDG+/PNa+ (Fig. 8), arguing that the extent of pore dilation in the I2 state is not related to ion flow in the I1 state. There was also no correlation between I1 PNMDG+/PNa+ and I2 PNMDG+/PNa+. We next asked, do permeability changes merely happen secondarily to the growth of I2 or do they mirror it? Table III
shows the rates for increases in PNMDG+/PNa+, as well as for the growth from I1 to I2 for rP2X2, mEL/rCT, and m430r channels. The rate constants for rP2X2, mEL/rCT, and m430r channels are the same for PNMDG+/PNa+ changes and growth of I2 from I1 at -60 mV. Overall, these data show that (a) I2 amplitude and PNMDG+/PNa+ provide measures of the same underlying phenomenon because they are well correlated and occur with the same rates across a range of mutants, and (b) PNMDG+/PNa+ changes are not a consequence of ion flow during the outward I1. Moreover, the data clearly show that whereas the tail swaps and chimeras produce profound effects on I2, they have no effect on I1 amplitude or I1 PNMDG+/PNa+ across experiments from 26 distinct channels (2 wild type channels, 14 point mutations, 10 chimeras; Figs. 6 8). A lack of effect on I1 serves as an internal control against any effects on overall protein conformation. But more so the data sharply focus attention on amino acids that specifically affect permeation of a channel state: I2.
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| DISCUSSION |
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Our finding that the pore dilates by at least 3 Å is consistent with measurements using dye uptake studies (Khakh et al., 1999
; Virginio et al., 1999a
,b
). Because cationic dye flux studies are interpreted in a binary fashion (the dye either permeates or not), they provide a cutoff for the pore size. For instance, YOPRO1 (16.8 x 12.8 x 8.2 Å) does not permeate P2X channels that lack the I2 state because two of its dimensions are larger than the I1 pore, which we estimated to be 11 Å in the present study for P2X2 channels. However, YOPRO1 permeability through P2X2 channels increases in a time-dependent manner during ATP application, reaching steady-state in 3050 s. This time course is slower than opening to the I1 state, which occurs in <300 ms (Fig. 1 A), but resembles the time for opening to the dilated state (Fig. 1 A), as measured either by the growth of I1 to I2, or by increases in PNMDG+/PNa+. These data imply that YOPRO1 does not permeate the 11 Å I1 states because of steric hindrance, but can permeate the dilated I2 state. These considerations imply that the pore of P2X channels must dilate by at least 2 Å, consistent with the electrophysiological data presented in this study indicating that the pore dilates by at least 3 Å. A more accurate estimate of I2 pore size is required, but the present paucity of approximately spherical monovalent cations larger than NMDG+ vitiates further EFT experiments. Moreover, an attempt to use polymers of variable length has proved unfruitful (Virginio et al., 1999a
). Perhaps novel approaches are required to accurately size the I2 state.
We compare our data to observations on P2X7 channels. Early studies of P2X7 channels carrying a truncated C tail suggested a role for the C tail domain in permeability changes, but did not pinpoint individual or stretches of important residues (Surprenant et al., 1996
). A single nucleotide polymorphism of the P2X7 channel gene in a population of humans with deficits in lymphocyte and monocyte function results in functionally impaired, but appropriately membrane localized, P2X7 channels carrying a E496A mutation in the COOH-terminal tail domain (Gu et al., 2001
). These observations support our present findings that distinct COOH-terminal domain residues affect P2X channel function, but our data are enlightening because they suggest a molecular explanation for the functional deficits in humans with the P2X7 channel E469A polymorphism (Gu et al., 2001
). In the simplest case, polymorphic E469A channels display impaired dye uptake through the I2 states (Gu et al., 2001
) because the C tail domains are locked in a nonpermissive state, as revealed by the appropriate mutants and chimeras reported here. The two nonpermissive residues identified in this study (S432 and D444 in mP2X2) and the E469A mutation in human polymorphic P2X7 channels all locate to a region of the C tail domain that is
100 residues from the pore-lining segment.
Permeability Measurements and Conductances
The present study adds quantitative details on the extent of the change from a relatively selective I1 state to a less selective I2 state, which permeates organic cations with ease. Our most complete dataset, for NMDG+, allows us to compare three related parameters for NMDG+ permeation in the rP2X2 I2 state: relative free solution mobility, relative conductance, and relative permeability. For the experiment specifically designed to compare permeability and conductance, these parameters for NMDG+ are, respectively, 0.49 (Barry and Lynch, 1991
; Ng and Barry, 1995
), 0.68 (Table I), and 0.34 (Table I), relative to Na+. As noted in RESULTS, the absolute magnitude of the permeability change varied somewhat between batches of oocytes, and the measured PNMDG+/PNa+ range was 0.170.34 across all our experiments. The slope conductance for NMDG+ in the I2 state is therefore surprisingly high relative to that for Na+.
Conductance is governed by several mechanisms not directly related to permeability, which primarily reflects a single rate-limiting filter. The interestingly high ratio of macroscopic NMDG+ to Na+ conductance calls for single-channel measurements of the I2 state. The pioneering single-channel studies of P2X2 channels (Ding and Sachs, 1999a
,b
) have not systematically explored the optimal conditions for production of the I2 state (Khakh et al., 1999
; Virginio et al., 1999b
): very low extracellular Ca2+ and concentrations of ATP >10 µM (Virginio et al., 1999b
). Moreover, rP2X2 channels in excised patches display inactivation kinetics that are quite different to those in whole-cell mode, implying the loss of necessary cytosolic components (Ding and Sachs, 2000
).
In the absence of single-channel I2 state recordings, we review several previously reported single-channel characteristics of the I1 state in monovalent metal cation solutions (NMDG+ single-channel currents are below the resolution of this state). At least two mechanisms decrease the macroscopic conductance (Ding and Sachs, 1999b
). There is an Na+ ion binding site
20% of the distance through the electric field (from the outside), with an affinity of
90 mM at -60 mV (Ding and Sachs, 1999a
). Under our conditions, this site would be 50% saturated. Single-channel recordings also show pronounced flickering; the maximal open probability is 0.6. One of these mechanisms might operate more strongly for Na+ than for NMDG+ in the I2 state, accounting for the interestingly high ratio of NMDG+ to Na+ slope conductance.
Toward a View of P2X Channel Gating
We observed profound effects for point mutants, chimeras, and tail swaps on I2 amplitude and I2 PNMDG+/PNa+ changes, but no effect on I1 amplitude or I1 PNMDG+/PNa+. A lack of effect on I1 across experiments from 26 distinct channels serves as a good internal control against effects on overall protein conformation, and strongly argues that the effect of the mutants and chimeras is specific to the permeation of the I2 state. With this control dataset in hand we can conclude that residues in the C tail affect the I2 state. But what are the structural details of this transition? P2X channels are the newest members of the transmitter-gated ion channels to be identified, they have little sequence homology with any other ion channels and relatively little is known about their structure-function relationships. Nonetheless, we present some plausible views.
Present evidence indicates that ATP binds to regions just extracellular to the transmembrane domains in P2X channels (Ennion et al., 2000
; Jiang et al., 2000
). In the present view, ATP binding causes motions in TM1 (Haines et al., 2001
; Jiang et al., 2001
), perhaps as the outer part of TM1 moves with respect to the outer part of TM2, that allow the pore to open at or near G342 in TM2 (Rassendren et al., 1997
; Egan et al., 1998
; Migita et al., 2001
). Our data suggest (Fig. 9)
that the transition from I1 to I2 increases the area across the narrowest region in the rP2X2 pore by at least
60 Å2, for a circular filter, or
76 Å2 for a square filter. This implies an increase in the pore diameter by at least 3 Å, but an accurate estimate of the I2 state pore size requires further work. The change is regulated by the disposition of side chains in a particular region of the cytoplasmic tail, but as previously demonstrated the change likely occurs at the pore (Khakh et al., 1999
; Virginio et al., 1999b
). Our data favor the model in which channels go from closed to open 1 (I1; pore diameter 11 Å) and then to open 2 (I2; pore diameter >14 Å) during a conformational change(s) in the C tail domain. This conformational change(s) proceeds at a rate of 0.5 s-1.
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The COOH-terminal tails of P2X2 channels contain several Pro-rich regions, which often bind other proteins (Fig. 5). Work published since submission of this paper has identified protein partners for the P2X7 channel (Kim et al., 2001
), and it is possible that a similar situation exists for P2X2 channels. Thus, permeability changes might involve interactions with other cytoplasmic partners, which may differ between mP2X2 and rP2X2 at the crucial two residues we have identified in this study. In particular, it has not escaped our attention that phosphorylation events on a time scale of milliseconds to seconds might participate in the transition to the I2 state. Indeed, P2X2 channel kinetics appear to be regulated by phosphorylation (Boue-Grabot et al., 2000
). A further possibility is that the C tail domain itself may not line the pore directly, but may be involved in the conformational change that allows the pore to dilate. In this scenario, the residues that lead to absence of I2 would effectively lock the C tail in a nonpermissive state (Fig. 9). In such a model the transition from the I1 to the I2 state might involve extensive changes in the C tail domain. A large shape change was recently suggested for the gating of the MscL channel (Sukharev et al., 2001
): the location of the C tail domain would change during opening as it moves radially from the inner aspect of the pore. Because MscL and P2X channels have similar membrane topologies and both permeate large ions (Khakh, 2001
), it is possible to consider that a similar gating mechanism may operate. The above hypotheses reveal several avenues of future experiments to better understand the contribution of the C tail domain to permeability changes at P2X2 channels, but solving the channel structure at atomic resolution in the closed and open states, and deciphering the nature of the transitions, may provide the only completely satisfying view.
| FOOTNOTES |
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| ACKNOWLEDGMENTS |
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Work in our labs was supported by a Wellcome Trust (UK) Prize Fellowship, Roche Bioscience, National Institutes of Health (NS-11756), and the Medical Research Council.
Submitted: 20 November 2001
Revised: 13 May 2002
Accepted: 15 May 2002
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